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Nextflow pipeline to extract syntenic blocks using the MCScanX program.

Link to running app: https://matrixapp.sk8.inrae.fr

MATRiX is a shiny application dedicated to Mining and Analysis of Transcriptomics data using common biostatistic result files (statistical test result table, normalised data table and samples-groups information). This application helps biologists to perform data exploration with PCA, Venn diagrams, StripCharts, volcanoplots, and Heatmap clustering of genes lists (selecting statistical thresholds) and functional enrichment analyses using a connection to enrichr. https://matrixapp.sk8.inrae.fr

Bisulfite Sequencing Processing Software : Snakemake Pipeline

Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.

Share some notes and scripts on the use of STAC.

Still under development

BioMa Component of Maize Leaf Area Index in Sirius Quality

Nextflow pipeline creating a Neo4j Ortho_KB database.

fichiers de support pour EDO Sys Dyn - MAM3 EPU Nice Sophia

Create an AppImage containing GfaViz

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.